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DBCO-CY5

Updated: 2026-07-20

Overview

DBCO-Cy5 is a bifunctional compound combining the near-infrared fluorescent dye Cy5 with a dibenzocyclooctyne (DBCO) group. The DBCO moiety enables strain-promoted azide-alkyne cycloaddition (SPAAC), a copper-free click chemistry reaction, while Cy5 provides strong fluorescence for detection. This combination makes it valuable in live-cell imaging and biomolecule tracking. Developed as an alternative to traditional labeling methods, DBCO-Cy5 offers faster reaction kinetics and reduced cytotoxicity compared to copper-catalyzed click chemistry. Its stability and sensitivity have made it a preferred tool in pharmaceutical research and diagnostic assay development.

Physical and Chemical Properties

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The compound exhibits a dark blue to purple appearance due to the Cy5 chromophore. It is typically supplied as a lyophilized powder with high purity (>95%). The DBCO group reacts selectively with azides at physiological pH and temperature, while the Cy5 dye absorbs maximally at ~650 nm and emits at ~670 nm, ideal for minimizing background interference in biological samples. Solubility is limited in aqueous buffers but excellent in polar organic solvents like DMSO or DMF. Stability tests indicate degradation under prolonged light exposure or at temperatures above 40°C, necessitating strict storage protocols.

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Main Applications

DBCO-Cy5 is extensively used in fluorescence microscopy and flow cytometry to label azide-modified biomolecules, such as glycoproteins or cell-surface receptors. Its near-infrared emission reduces autofluorescence in tissues, enabling deep-tissue imaging applications. In drug discovery, it serves as a tracer for target engagement studies or antibody-drug conjugate (ADC) characterization. The compound also facilitates the development of diagnostic probes, particularly in multiplex assays where multiple dyes are required for simultaneous detection.

Safety and Storage

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As a light-sensitive compound, DBCO-Cy5 requires protection from direct sunlight and prolonged exposure to ambient light. Recommended storage is at -20°C under argon or nitrogen to prevent oxidation. Aliquoting is advised to avoid repeated freeze-thaw cycles. Safety data sheets classify it as harmful if inhaled or ingested. Laboratory handling should include gloves, safety goggles, and fume hoods. Spills must be contained with inert absorbents and disposed of as hazardous organic waste.

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B2B Procurement Guide

When sourcing DBCO-Cy5, prioritize suppliers with ISO-certified manufacturing facilities. Key specifications to verify include HPLC purity (>95%), absence of free Cy5 dye impurities, and moisture content (<1%). Batch-to-batch consistency is critical for reproducibility in long-term studies. Bulk purchasing (100 mg+) may reduce costs by 15–30%, but validate stability claims for larger quantities. Some vendors offer custom conjugation services (e.g., peptide-DBCO-Cy5 constructs), which can streamline downstream applications. Lead times for specialty orders typically range from 2–6 weeks.

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